Firstof all, come from Computer science background ,so I have very little knowledge in Bioinformatics.
Now my question ;
I assemble AB1 files using phred/phrap.I noticed that after assembling using 'phrap', it generates contig file (say 'seq.contigs') and a contig-quality file ('seq.contigs.qual').
Now,I want to get the same contig which generated by ChromasPro using phrap.
I noticed that ,if I ignore the config bases with quality value '0' (which stored in seq.contigs.qual) , I can get almost same sequence as ChromasPro.
Is this correct?
This there a parameter to do this in 'phrap' itself?