I just wanted to make you aware of our new graphical tool RobiNA to
analyze RNASeq data.
It allows you to quality control and trim your raw reads and to
identify differentially expressed genes using BioConductor.
However unlike working on the command line, the whole workflow is
organized in a simple to use graphical user interface with inline help (which you might
know from our microarray tool Robin) and RobiNA will do all the tedious
work for you.
The results are provided both as detailed tables, that can be loaded
and browsed in Excel or MapMan, and as convenient PDF summaries
that allow an overview of the experiment at a glance.